SMTL ID : 5yh4.1

Miraculin-like protein from Vitis vinifera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: D.47, E.98, F.107, T.109, R.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.164, A:R.164 Water bridges: A:E.98, A:E.98, A:Q.159 EDO.2: 5 residues within 4Å: Chain A: S.86, T.87, C.89, Q.91, T.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.87 EDO.3: 7 residues within 4Å: Chain A: P.25, G.31, G.32, G.33, E.54, S.56, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.31 EDO.4: 7 residues within 4Å: Chain A: T.35, A.37, V.49, Q.50, E.51, Q.52, Y.162 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.51, A:E.51, A:Q.52 Water bridges: A:H.53 EDO.5: 3 residues within 4Å: Chain A: P.6, L.8, Q.14 No protein-ligand interaction detected (PLIP) EDO.6: 1 residues within 4Å: Chain A: K.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.148, A:K.148 EDO.7: 3 residues within 4Å: Chain A: T.10, D.134, M.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.10, A:D.134 Water bridges: A:G.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohkura, S.I. et al., Structural and functional analysis of miraculin-like protein from Vitis vinifera. Biochim Biophys Acta Proteins Proteom (2018)

Release Date

2018-10-03

Peptides

mirauclin-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

mirauclin-like protein