SMTL ID : 5yht.1

Crystal structure of a phosphatase from Mycobacterium tuberculosis in complex with its substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: E.74, D.90, D.93, D.220 Ligands: ZN.2, HSA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.74, A:D.90, A:D.220, A:D.220, H2O.1 ZN.2: 7 residues within 4Å: Chain A: D.51, E.74, E.75, D.90, I.92 Ligands: ZN.1, HSA.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.51, A:E.74, A:D.90, A:I.92 ZN.6: 5 residues within 4Å: Chain B: E.74, D.90, D.93, D.220 Ligands: PO4.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.74, B:D.90, B:D.220, B:D.220 ZN.7: 4 residues within 4Å: Chain B: D.93, D.196, D.220 Ligands: PO4.8 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.93, H2O.1

1 x HSA: PHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER(Non-covalent)

HSA.3: 14 residues within 4Å: Chain A: D.51, E.74, D.90, I.92, D.93, G.94, T.95, K.96, D.196, E.213, D.220 Ligands: ZN.1, ZN.2, PO4.9 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.93, A:D.93, A:G.94, A:T.95, A:T.95, A:D.196 Water bridges: A:T.95, A:T.95

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: R.190, R.192 Chain B: S.167, S.168 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:R.190 Salt bridges: A:R.190, A:R.192 Hydrogen bonds: B:S.168 PO4.8: 8 residues within 4Å: Chain B: I.92, D.93, G.94, T.95, D.196, D.220 Ligands: ZN.6, ZN.7 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.94, B:T.95, B:T.95, B:T.95, B:D.220 Water bridges: B:D.220 PO4.9: 5 residues within 4Å: Chain A: S.167, S.168 Chain B: R.190, R.192 Ligands: HSA.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.190, B:R.192 Hydrogen bonds: A:S.168

1 x HSO: L-histidinol(Non-covalent)

HSO.5: 9 residues within 4Å: Chain A: P.103, V.104, L.127, Y.194, L.198 Chain B: P.103, V.104, L.127, L.198 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jha, B. et al., Identification and structural characterization of a histidinol phosphate phosphatase fromMycobacterium tuberculosis. J. Biol. Chem. (2018)

Release Date

2018-05-23

Peptides

Histidinol-phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidinol-phosphatase

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