SMTL ID : 5yie.1

Crystal Structure of KNI-10742 bound Plasmepsin II (PMII) from Plasmodium falciparum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 9 residues within 4Å: Chain A: V.76, S.77, P.111, T.112, P.241, F.242, I.288 Ligands: CPS.2, 8VF.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.76, A:F.242, A:I.288 Hydrogen bonds: A:V.76, A:T.112 CPS.2: 8 residues within 4Å: Chain A: N.74, V.76, L.290, D.291, F.292, P.293 Ligands: CPS.1, 8VF.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.74, A:F.292

1 x 8VF: (4R)-3-[(2S,3S)-3-[2-[4-[2-azanylethyl(ethyl)amino]-2,6-dimethyl-phenoxy]ethanoylamino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-N-[(1S,2R)-2-oxidanyl-2,3-dihydro-1H-inden-1-yl]-1,3-thiazolidine-4-carboxamide(Non-covalent)

8VF.3: 23 residues within 4Å: Chain A: I.30, D.32, G.34, S.35, M.73, Y.75, V.76, S.77, I.121, L.129, I.131, D.212, G.214, T.215, S.216, T.219, I.288, L.290, F.292, I.298 Ligands: CPS.1, CPS.2, NA.4 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.30, A:V.76, A:I.121, A:L.129, A:L.129, A:T.215, A:T.219, A:I.288, A:L.290, A:F.292, A:I.298 Hydrogen bonds: A:D.32, A:G.34, A:G.34, A:V.76, A:S.77, A:G.214, A:S.216, A:S.216

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: D.32, G.34, D.212, G.214, T.215 Ligands: 8VF.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.34, A:G.214, A:T.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, V. et al., Deciphering the mechanism of potent peptidomimetic inhibitors targeting plasmepsins - biochemical and structural insights. Febs J. (2018)

Release Date

2018-07-11

Peptides

Plasmepsin II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plasmepsin II

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