SMTL ID : 5yih.1

Crystal structure of tetrameric Nucleoside diphosphate kinase at 1.98 A resolution from Acinetobacter baumannii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-tetramer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.112 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.112, A:D.112, H2O.2 MG.2: 2 residues within 4Å: Chain A: N.136 Chain C: D.46 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: C:D.46, A:N.136, H2O.1, H2O.1, H2O.8 MG.3: 2 residues within 4Å: Chain A: D.46 Chain C: N.136 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: C:N.136, A:D.46, H2O.2, H2O.8, H2O.9 MG.4: 2 residues within 4Å: Chain C: D.62, D.112 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.112, H2O.8, H2O.9 MG.5: 2 residues within 4Å: Chain B: Y.131 Chain D: N.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bairagya, H.R. et al., Crystal structure of tetrameric Nucleoside diphosphate kinase at 1.98 A resolution from Acinetobacter baumannii. To Be Published

Release Date

2017-10-25

Peptides

Nucleoside diphosphate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Nucleoside diphosphate kinase

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