SMTL ID : 5yij.1

Structure of a Legionella effector with substrates

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

hetero-1-3-mer

Ligands

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 18 residues within 4Å: Chain A: Q.483, N.484, F.489, N.493, Q.497, R.499, R.536, G.537, L.538, N.539, M.583, S.590, T.591, T.592, V.598, W.602, E.632 Chain C: R.74 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:T.592, A:W.602, A:W.602 Hydrogen bonds: A:N.484, A:N.493, A:Q.497, A:R.499, A:R.499, A:G.537, A:G.537, A:N.539, A:N.539, A:S.590, C:R.74 Salt bridges: A:R.499, A:R.536, A:R.536 pi-Cation interactions: A:R.499, A:R.499

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, Y. et al., Structural basis of ubiquitin modification by the Legionella effector SdeA. Nature (2018)

Release Date

2018-05-30

Peptides

SdeA: A
Ubiquitin: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
G

SdeA

Ubiquitin

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