SMTL ID : 5yjl.1 (1 other biounit)

Crystal structure of Arabidopsis glutamyl-tRNA reductase in complex with NADPH and GBP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 21 residues within 4Å: Chain A: C.73, Q.143, A.185, V.188, G.214, A.215, G.216, K.217, M.218, N.238, R.239, S.240, R.243, L.261, S.277, T.278, A.279, S.280, I.309, S.310, V.311 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.188 Hydrogen bonds: A:Q.143, A:A.215, A:K.217, A:M.218, A:N.238, A:N.238, A:R.239, A:R.239, A:S.240, A:T.278, A:A.279, A:V.311 Water bridges: A:G.219, A:R.243 Salt bridges: A:R.239, A:R.243, A:R.243 pi-Cation interactions: A:R.239, A:R.239 NAP.2: 19 residues within 4Å: Chain B: C.73, A.185, V.188, A.215, G.216, K.217, M.218, N.238, R.239, S.240, R.243, L.261, S.277, T.278, A.279, S.280, I.309, S.310, V.311 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:V.188 Hydrogen bonds: B:A.215, B:K.217, B:M.218, B:N.238, B:N.238, B:S.240, B:T.278, B:T.278, B:A.279, B:V.311 Water bridges: B:A.185, B:G.216, B:G.219, B:R.243, B:R.243, B:R.243, B:N.314 Salt bridges: B:R.239, B:R.243, B:R.243 pi-Cation interactions: B:R.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, A. et al., Crystal structure of Arabidopsis thaliana glutamyl-tRNAGlureductase in complex with NADPH and glutamyl-tRNAGlureductase binding protein. Photosyn. Res. (2018)

Release Date

2018-05-30

Peptides

Glutamyl-tRNA reductase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamyl-tRNA reductase 1

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