- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- monomer
- Ligands
- 1 x CO: COBALT (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 8 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.7: 4 residues within 4Å:- Chain A: P.151, S.152, I.209, R.214
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.214, A:R.214
PG4.8: 6 residues within 4Å:- Chain A: P.12, I.178, G.179, P.239, Q.240, V.241
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.178
PG4.9: 4 residues within 4Å:- Chain A: A.106, H.109, L.110, P.113
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.30
PG4.10: 6 residues within 4Å:- Chain A: G.156, G.157, E.158, K.276, V.277, E.303
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.157, A:V.277
- Water bridges: A:N.278
PG4.11: 7 residues within 4Å:- Chain A: R.201, Y.213, S.215, L.216, L.299, V.300, S.301
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.201, A:R.201, A:Y.213, A:L.216, A:S.301
- Water bridges: A:S.301
PG4.12: 2 residues within 4Å:- Chain A: Q.15, D.17
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.17
- Water bridges: A:Q.15
PG4.13: 3 residues within 4Å:- Chain A: Y.205, G.212, Y.213
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.213
PG4.14: 2 residues within 4Å:- Chain A: R.177, D.263
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.177, A:D.263
- Water bridges: A:R.177, A:D.263
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.15: 5 residues within 4Å:- Chain A: F.164, R.174, W.176, V.262, L.268
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.164, A:W.176, A:V.262
- Water bridges: A:R.127
- Salt bridges: A:R.174
ACT.16: 3 residues within 4Å:- Chain A: F.150, P.151, S.152
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.152
- Salt bridges: A:K.140
ACT.17: 2 residues within 4Å:- Chain A: E.292, N.296
No protein-ligand interaction detected (PLIP)ACT.18: 4 residues within 4Å:- Chain A: P.154, T.155, G.156, K.211
3 PLIP interactions:3 interactions with chain A- Water bridges: A:P.154, A:T.155, A:G.156
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joo, S.H. et al., Biochemical and Structural Insights into an Fe(II)/ alpha-Ketoglutarate/O2-Dependent Dioxygenase, Kdo 3-Hydroxylase (KdoO). J. Mol. Biol. (2018)
- Release Date
- 2018-09-05
- Peptides
- Uncharacterized protein KdoO: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- monomer
- Ligands
- 1 x CO: COBALT (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 8 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joo, S.H. et al., Biochemical and Structural Insights into an Fe(II)/ alpha-Ketoglutarate/O2-Dependent Dioxygenase, Kdo 3-Hydroxylase (KdoO). J. Mol. Biol. (2018)
- Release Date
- 2018-09-05
- Peptides
- Uncharacterized protein KdoO: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A