SMTL ID : 5ykd.1

Crystal structure of dihydropyrimidinase from Pseudomonas aeruginosa PAO1 at 2.17 angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: K.150, H.183, H.239 Ligands: ZN.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.183 ZN.2: 5 residues within 4Å: Chain A: H.59, H.61, K.150, D.316 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.59, A:H.61, A:D.316 ZN.3: 4 residues within 4Å: Chain B: K.150, H.183, H.239 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.183, B:H.239 ZN.4: 5 residues within 4Å: Chain B: H.59, H.61, K.150, D.316 Ligands: ZN.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.59, B:H.61, B:D.316 ZN.5: 5 residues within 4Å: Chain C: K.150, H.183, H.239, S.289 Ligands: ZN.6 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.239 ZN.6: 5 residues within 4Å: Chain C: H.59, H.61, K.150, D.316 Ligands: ZN.5 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.59, C:H.61, C:D.316 ZN.7: 5 residues within 4Å: Chain D: H.59, H.61, K.150, D.316 Ligands: ZN.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.59, D:H.61, D:D.316 ZN.8: 4 residues within 4Å: Chain D: K.150, H.183, H.239 Ligands: ZN.7 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.183, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, J.H. et al., Structural Basis for pH-Dependent Oligomerization of Dihydropyrimidinase fromPseudomonas aeruginosaPAO1. Bioinorg Chem Appl (2018)

Release Date

2018-02-21

Peptides

D-hydantoinase/dihydropyrimidinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-hydantoinase/dihydropyrimidinase

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