SMTL ID : 5yki.1

Crystal structure of the engineered nine-repeat PUF domain in complex with cognate 9nt-RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x U- G- U- U- G- U- A- U- A: RNA (5'-R(*UP*GP*UP*UP*GP*UP*AP*UP*A)-3')(Non-covalent)

U-G-U-U-G-U-A-U-A.1: 43 residues within 4Å: Chain A: Q.56, R.60, Q.63, V.92, F.93, N.95, Y.96, Q.99, Y.129, C.131, R.132, Q.135, Q.164, N.167, Y.168, Q.171, K.200, F.201, S.203, N.204, E.207, Q.243, Y.244, N.246, Y.247, Q.250, Q.279, Y.280, N.282, Y.283, Q.286, K.315, F.316, S.318, N.319, E.322, Q.358, Y.359, N.361, Y.362, Q.365, Y.395, H.398 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y.Y. et al., Expanding RNA binding specificity and affinity of engineered PUF domains. Nucleic Acids Res. (2018)

Release Date

2018-03-14

Peptides

Pumilio homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pumilio homolog 1

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