SMTL ID : 5yl3.1

Crystal structure of horse heart myoglobin reconstituted with manganese porphycene in resting state at pH 8.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x HNN: PORPHYCENE CONTAINING MN(Non-covalent)

HNN.1: 16 residues within 4Å: Chain A: K.43, F.44, K.46, H.65, V.68, V.69, A.72, I.76, L.90, S.93, H.94, H.98, I.100, Y.104, I.108, F.139 21 PLIP interactions: 20 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:V.68, A:V.69, A:A.72, A:I.76, A:L.90, A:L.90, A:I.100, A:I.100, A:Y.104, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:K.46, A:H.65 Salt bridges: A:K.46, A:H.94, A:H.98 Metal complexes: A:H.94, H2O.1

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: T.52, E.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.53 Water bridges: A:T.52, A:A.54 SO4.3: 4 residues within 4Å: Chain A: G.81, H.82, H.83, E.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.82, A:H.83, A:E.84 SO4.4: 3 residues within 4Å: Chain A: R.32, G.36, H.37 9 PLIP interactions: 9 interactions with chain A Water bridges: A:R.32, A:R.32, A:R.32, A:R.32, A:R.32, A:G.36, A:F.107 Salt bridges: A:R.32, A:H.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oohora, K. et al., Manganese(V) Porphycene Complex Responsible for Inert C-H Bond Hydroxylation in a Myoglobin Matrix. J. Am. Chem. Soc. (2017)

Release Date

2017-12-27

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin