SMTL ID : 5yl5.1

Crystal structure of dodecameric Dehydroquinate dehydratase from Acinetobacter baumannii at 1.9A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-12-mer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.2: 9 residues within 4Å: Chain A: W.54, E.55, G.56 Chain B: W.54, E.55, G.56 Chain C: W.54, E.55, G.56 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain B: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain C: Y.24, N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain D: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain E: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.9: 9 residues within 4Å: Chain E: W.54, E.55, G.56 Chain F: W.54, E.55, G.56 Chain G: W.54, E.55, G.56 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain F: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain G: L.13, N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain H: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.16: 9 residues within 4Å: Chain D: W.54, E.55, G.56 Chain H: W.54, E.55, G.56 Chain L: W.54, E.55, G.56 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain I: L.13, N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.18: 9 residues within 4Å: Chain I: W.54, E.55, G.56 Chain J: W.54, E.55, G.56 Chain K: W.54, E.55, G.56 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain J: L.13, N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.20: 6 residues within 4Å: Chain K: L.13, N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain L: N.76, A.78, H.102, L.103, S.104 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: E.55, T.83, S.84 Chain B: E.55, T.83, S.84 Chain C: E.55, T.83, S.84 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:T.83, B:T.83, C:E.55, A:T.83 GOL.10: 1 residues within 4Å: Chain E: E.20 No protein-ligand interaction detected (PLIP) GOL.11: 3 residues within 4Å: Chain E: E.20, P.21, E.22 No protein-ligand interaction detected (PLIP) GOL.12: 1 residues within 4Å: Chain E: E.22 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.22

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 10 residues within 4Å: Chain D: E.55, L.80, T.83, S.84 Chain H: E.55, T.83, S.84 Chain L: E.55, T.83, S.84 8 PLIP interactions: 5 interactions with chain D, 1 interactions with chain L, 2 interactions with chain H Hydrogen bonds: D:E.55, D:T.83, D:T.83, L:T.83, H:T.83, H:T.83 Water bridges: D:E.55, D:E.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iqbal, N. et al., Crystal structure of dodecameric Dehydroquinate dehydratase from Acinetobacter baumannii at 1.9A resolution. To Be Published

Release Date

2017-11-01

Peptides

3-dehydroquinate dehydratase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

3-dehydroquinate dehydratase

Related Entries With Identical Sequence