SMTL ID : 5ymt.7 (13 other biounits)

Functional and structural characterization of P[19] rotavirus VP8* interaction with histo-blood group antigens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GLC- GAL- NAG- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose

GLC-GAL-NAG-GAL.1: 9 residues within 4Å: Chain A: L.104, H.106, G.107, R.109, W.111, T.121, T.122, R.146, E.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.122, A:R.109, A:R.109, A:T.122, A:R.146, A:E.149 Water bridges: A:E.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, X. et al., Glycan Binding Specificity and Mechanism of Human and Porcine P[6]/P[19] Rotavirus VP8*s. J. Virol. (2018)

Release Date

2018-05-02

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Outer capsid protein VP4

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