SMTL ID : 5ymx.1 (1 other biounit)

Myxococcus xanthus MglA in GDP bound conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: P.20, G.21, L.22, C.23, G.24, K.25, T.26, T.27, P.80, G.81, N.141, K.142, D.144, L.145, V.169, A.170, P.171 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:L.22, A:C.23, A:G.24, A:K.25, A:T.26, A:T.26, A:T.27, A:T.27, A:G.81, A:N.141, A:K.142, A:K.142, A:A.170 Water bridges: A:T.27 Salt bridges: A:K.25, A:D.144 pi-Cation interactions: A:K.142

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 7 residues within 4Å: Chain A: S.2, F.3, N.12, C.13, K.14, H.75, Y.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.12 Water bridges: A:K.14, A:K.94 pi-Stacking: A:H.75

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: K.133, I.134, P.135, L.186, E.190 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.186, A:E.190

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 1 residues within 4Å: Chain A: H.202 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:H.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baranwal, J. et al., Allosteric regulation of a prokaryotic small Ras-like GTPase contributes to cell polarity oscillations in bacterial motility. Plos Biol. (2019)

Release Date

2018-10-24

Peptides

Mutual gliding-motility protein MglA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mutual gliding-motility protein MglA

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