SMTL ID : 5ynx.1

Structure of house dust mite allergen Der f 21 in PEG400

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

homo-dimer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 11 residues within 4Å: Chain A: L.19, F.23, K.26, Y.66, G.69, A.70, F.73 Chain B: L.19, Y.66, F.73, M.74 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.66 Water bridges: B:Y.66

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.3, W.11, R.12, N.13, A.14, H.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.11 Water bridges: A:V.3, A:A.14, A:M.18 GOL.4: 6 residues within 4Å: Chain B: V.3, W.11, R.12, N.13, A.14, H.17 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.11 Water bridges: B:V.3

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 6 residues within 4Å: Chain A: M.18, E.22 Chain B: K.26, Q.29, I.30, Y.66 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, S.L. et al., Crystal structure and epitope analysis of house dust mite allergen Der f 21. Sci Rep (2019)

Release Date

2019-03-13

Peptides

Allergen Der f 21: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Allergen Der f 21