SMTL ID : 5yog.1

Crystal Structure of flavodoxin with engineered disulfide bond N14C-C93

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 18 residues within 4Å: Chain A: S.10, T.11, T.12, G.13, C.14, T.15, S.58, T.59, W.60, G.61, D.62, C.93, G.94, D.95, W.98, Y.100, F.101, C.102 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:W.60, A:W.98 Hydrogen bonds: A:T.11, A:T.12, A:T.12, A:G.13, A:C.14, A:T.15, A:S.58, A:S.58, A:T.59, A:T.59, A:D.95, A:Y.100, A:C.102 Water bridges: A:T.12, A:G.94, A:G.94, A:D.95, A:Y.100 pi-Stacking: A:W.98, A:W.98

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.61, D.62, D.63, S.64, E.66 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.62, A:D.63, A:D.63, A:S.64 Water bridges: A:G.61 GOL.3: 2 residues within 4Å: Chain A: D.69, P.73 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: E.109, D.122, G.123, R.125 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.109, A:G.123 Water bridges: A:R.125, A:R.125 Salt bridges: A:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pu, M. et al., Protein crystal quality oriented disulfide bond engineering. Protein Cell (2018)

Release Date

2018-03-14

Peptides

Flavodoxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavodoxin