SMTL ID : 5yoi.1

Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105T mutant) in complex with Methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 7 residues within 4Å: Chain A: D.176, H.239, T.270, E.272, E.303 Ligands: CO.2, MET.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.176, A:H.239, A:E.272, A:E.303 CO.2: 6 residues within 4Å: Chain A: D.165, T.167, D.176, E.303 Ligands: CO.1, MET.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.165, A:D.165, A:D.176, A:E.303

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: L.142, N.143, V.145, T.299 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.143, A:T.299

1 x MET: METHIONINE(Non-covalent)

MET.4: 15 residues within 4Å: Chain A: T.128, Y.131, F.134, T.139, D.165, T.167, D.176, H.239, F.245, H.246, E.272, W.289, E.303 Ligands: CO.1, CO.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.245 Hydrogen bonds: A:T.167 Water bridges: A:D.165, A:D.165, A:Q.301 Salt bridges: A:H.239, A:H.246

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: S.71, E.72, P.73, W.74 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.71, A:W.74, A:W.74 Water bridges: A:V.75 GOL.6: 6 residues within 4Å: Chain A: P.265, G.266, L.307, V.308, T.309, D.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.266, A:V.308 Water bridges: A:R.85 GOL.7: 4 residues within 4Å: Chain A: T.107, D.109, E.110, S.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.107, A:D.109 Water bridges: A:T.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandeep, C.B. et al., Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105T mutant) in complex with Methionine. To Be Published

Release Date

2018-11-07

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase