- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 2 x LYS: LYSINE(Non-covalent)
LYS.5: 7 residues within 4Å:- Chain A: R.106, E.208, E.209, D.211, Y.645, N.691
- Ligands: PRO.6
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.106, A:E.208, A:E.209, A:D.211, A:Y.645, A:N.691
LYS.17: 7 residues within 4Å:- Chain B: R.106, E.208, E.209, Y.645, N.691
- Ligands: GOL.13, PRO.18
6 PLIP interactions:6 interactions with chain B,- Hydrogen bonds: B:R.106, B:E.208, B:E.209, B:Y.645, B:N.691
- Water bridges: B:E.209
- 2 x PRO: PROLINE(Covalent)
PRO.6: 9 residues within 4Å:- Chain A: Y.527, S.613, N.614, V.639, Y.645, Y.649, V.692, H.721
- Ligands: LYS.5
4 PLIP interactions:4 interactions with chain A,- Hydrophobic interactions: A:V.639, A:Y.649, A:V.692
- Hydrogen bonds: A:N.614
PRO.18: 10 residues within 4Å:- Chain B: Y.527, S.613, N.614, V.639, Y.645, Y.649, V.692, H.721
- Ligands: GOL.13, LYS.17
4 PLIP interactions:4 interactions with chain B,- Hydrophobic interactions: B:V.639, B:Y.649, B:V.692
- Hydrogen bonds: B:N.614
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roppongi, S. et al., Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues. Sci Rep (2018)
- Release Date
- 2018-02-21
- Peptides
- Dipeptidyl aminopeptidase 4: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 2 x LYS: LYSINE(Non-covalent)
- 2 x PRO: PROLINE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roppongi, S. et al., Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues. Sci Rep (2018)
- Release Date
- 2018-02-21
- Peptides
- Dipeptidyl aminopeptidase 4: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B