SMTL ID : 5yp5.1

Crystal structure of RORgamma complexed with SRC2 and compound 5d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x LYS- ILE- LEU- HIS- ARG- LEU- LEU- GLN: SRC2-2 peptide(Non-covalent)

LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN.1: 12 residues within 4Å: Chain A: V.68, K.72, F.77, M.78, Q.82, Q.85, I.86, L.89, P.236, L.237, E.240, L.241 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.68, A:K.72, A:F.77, A:I.86, A:L.89, A:P.236, A:L.237, A:L.237, A:L.241 Hydrogen bonds: A:Q.82, A:E.240, A:E.240, A:E.240

1 x 4CZ: 2-[4-(ethylsulfonyl)phenyl]-N-{5-[2-(2-methylpropyl)benzoyl]-4-phenyl-1,3-thiazol-2-yl}acetamide(Non-covalent)

4CZ.2: 19 residues within 4Å: Chain A: C.21, Q.22, L.23, L.28, C.56, H.59, L.60, M.94, R.100, M.101, R.103, A.104, F.113, F.114, F.124, L.127, I.133, I.136, F.137 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.22, A:L.23, A:L.60, A:R.100, A:A.104, A:F.113, A:L.127, A:I.136, A:I.136, A:F.137 Hydrogen bonds: A:F.113 Water bridges: A:F.113, A:E.115 pi-Stacking: A:F.114, A:F.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., From ROR gamma t Agonist to Two Types of ROR gamma t Inverse Agonists. ACS Med Chem Lett (2018)

Release Date

2018-04-04

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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