SMTL ID : 5yp6.1

RORgamma (263-509) complexed with SRC2 and Compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x LYS- ILE- LEU- HIS- ARG- LEU- LEU- GLN: SRC2(Non-covalent)

LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN.1: 10 residues within 4Å: Chain A: K.72, M.78, Q.82, Q.85, I.86, L.89, P.236, L.237, E.240, L.241 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.72, A:I.86, A:P.236, A:L.237, A:L.241 Hydrogen bonds: A:Q.82, A:E.240, A:E.240, A:E.240

1 x 4CX: N-[3'-cyano-4'-(2-methylpropyl)-2-(trifluoromethyl)biphenyl-4-yl]-2-[4-(ethylsulfonyl)phenyl]acetamide(Non-covalent)

4CX.2: 23 residues within 4Å: Chain A: C.21, Q.22, L.23, L.28, W.53, C.56, H.59, L.60, M.94, R.100, M.101, R.103, A.104, V.112, F.113, F.114, F.124, L.127, C.129, L.132, I.133, I.136, H.215 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.23, A:W.53, A:H.59, A:L.60, A:R.100, A:A.104, A:F.124, A:L.127, A:L.132, A:I.133, A:I.136 Hydrogen bonds: A:F.113 Water bridges: A:E.115 pi-Stacking: A:F.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., From ROR gamma t Agonist to Two Types of ROR gamma t Inverse Agonists. ACS Med Chem Lett (2018)

Release Date

2018-02-07

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma