SMTL ID : 5yq5.2 (3 other biounits)

Crystal structure of human osteomodulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: K.160, S.161, N.185, K.211 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.160 Hydrogen bonds: A:N.185, A:N.185 NAG.2: 3 residues within 4Å: Chain A: Y.193, S.219, N.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.193, A:S.219, A:S.219 NAG.3: 2 residues within 4Å: Chain A: N.314, V.317 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: H.326, H.329 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tashima, T. et al., Molecular basis for governing the morphology of type-I collagen fibrils by Osteomodulin. Commun Biol (2018)

Release Date

2018-04-25

Peptides

Osteomodulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Osteomodulin

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