SMTL ID : 5yqx.1

Crystal Structure Analysis of the BRD4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x E0K: (2R)-2-(cyclopropylmethyl)-7-(3,5-dimethyl-1,2-oxazol-4-yl)-4H-1,4-benzoxazin-3-one(Non-covalent)

E0K.1: 11 residues within 4Å: Chain A: W.54, P.55, F.56, V.60, L.65, L.67, Y.70, N.113, D.118, I.119, M.122 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.54, A:P.55, A:F.56, A:V.60, A:L.65, A:L.67, A:D.118, A:I.119 Hydrogen bonds: A:N.113

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: T.46, K.49, H.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.46

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108, I.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.75, A:T.76, A:T.76, A:N.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, X. et al., Benzoxazinone-containing 3,5-dimethylisoxazole derivatives as BET bromodomain inhibitors for treatment of castration-resistant prostate cancer. Eur.J.Med.Chem. (2018)

Release Date

2018-11-28

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4