SMTL ID : 5yqz.1

Structure of the glucagon receptor in complex with a glucagon analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.36, R.37 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: N.55, F.72 No protein-ligand interaction detected (PLIP)

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 3 residues within 4Å: Chain A: F.118, F.518, F.519 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.518, A:F.519 OLC.4: 6 residues within 4Å: Chain A: T.123, S.127, L.130, L.169, R.176 Ligands: OLC.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.130 Hydrogen bonds: A:R.176 OLC.5: 7 residues within 4Å: Chain A: S.166, L.169, V.170, G.173, L.174, R.176, T.177 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.169, A:V.170 Hydrogen bonds: A:R.176, A:T.177, A:T.177 OLC.6: 6 residues within 4Å: Chain A: V.499, F.502, V.503, D.505, E.506, K.516 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.499, A:F.502, A:V.503 Hydrogen bonds: A:K.516, A:K.516 OLC.7: 8 residues within 4Å: Chain A: S.116, Q.119, V.120, T.123, V.124, R.176 Ligands: OLC.4, OLC.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.120, A:T.123, A:V.124 Hydrogen bonds: A:Q.119 OLC.8: 2 residues within 4Å: Chain A: V.120 Ligands: OLC.7 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 4 residues within 4Å: Chain A: I.262, G.263, D.303, F.337 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structure of the glucagon receptor in complex with a glucagon analogue. Nature (2018)

Release Date

2018-01-17

Peptides

Glucagon receptor,Endolysin,Glucagon receptor: A
Glucagon analogue: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
P

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Glucagon receptor,Endolysin,Glucagon receptor

Glucagon analogue