SMTL ID : 5yr7.1

Human methionine aminopeptidase type 1b (F309L mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: D.162, D.173, E.300 Ligands: CO.2, MET.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.162, A:D.162, A:D.173, A:E.300, MET.6 CO.2: 7 residues within 4Å: Chain A: D.173, H.236, T.267, E.269, E.300 Ligands: CO.1, MET.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.173, A:H.236, A:E.269, A:E.300, MET.6 CO.3: 3 residues within 4Å: Chain A: H.145, H.243 Ligands: MET.6 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.145, H2O.2, H2O.3 CO.4: 1 residues within 4Å: Chain A: H.32 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.32, H2O.3, H2O.3

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: S.138, V.139, N.140, V.142, S.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.296, A:S.296

1 x MET: METHIONINE(Non-covalent)

MET.6: 15 residues within 4Å: Chain A: P.125, F.131, C.136, H.145, D.162, T.164, D.173, H.236, H.243, E.269, W.286, E.300 Ligands: CO.1, CO.2, CO.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.243 Salt bridges: A:H.236, A:H.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pillalamarri, V. et al., Differential inhibition of Sub-Type 1 Methionine aminopeptidases by ovalicin. To Be Published

Release Date

2018-11-14

Peptides

Methionine aminopeptidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 1