SMTL ID : 5yro.1

RanL182A in complex with RanBP1-CRM1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 26 residues within 4Å: Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, F.35, E.36, K.37, K.38, Y.39, A.41, T.42, T.66, A.67, G.68, N.122, K.123, D.125, I.126, S.150, A.151, K.152 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:D.18, A:G.20, A:T.21, A:T.21, A:G.22, A:G.22, A:K.23, A:T.24, A:T.25, A:T.25, A:E.36, A:T.42, A:T.66, A:G.68, A:N.122, A:K.123, A:K.123, A:A.151, A:K.152 Water bridges: A:T.24, A:T.24 Salt bridges: A:K.23, A:K.23, A:D.125 pi-Stacking: A:F.35, A:F.35

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 4 residues within 4Å: Chain A: T.24, T.42, D.65 Ligands: GTP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.24, H2O.1, H2O.1 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: N.100, N.103, W.104, D.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.103

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain C: L.807, N.811, D.852, W.856 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.811

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain C: T.972, S.973, E.974 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain C: K.532, K.570, C.571, K.572, Y.573 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: P.63, Q.64, N.115 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: R.229, Y.230 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Q. et al., RanL182A in complex with RanBP1-CRM1. To Be Published

Release Date

2018-11-21

Peptides

GTP-binding nuclear protein Ran: A
Ran-specific GTPase-activating protein 1: B
Exportin-1,Exportin-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GTP-binding nuclear protein Ran

Ran-specific GTPase-activating protein 1

Exportin-1,Exportin-1

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