SMTL ID : 5yrx.1

Crystal structure of a hypothetical protein Rv3716c from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: E.74, D.78 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.74, A:D.78, A:D.78 CD.5: 2 residues within 4Å: Chain B: E.74, D.78 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.74, B:D.78, B:D.78

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.64, P.65, K.66 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.64 EDO.3: 6 residues within 4Å: Chain A: H.40, G.41, Q.42, K.49, V.50, V.51 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.41 EDO.4: 6 residues within 4Å: Chain A: G.56, E.57, V.58 Chain B: M.84, R.85, S.88 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.88, A:V.58 EDO.6: 3 residues within 4Å: Chain B: D.64, P.65, K.66 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.64 EDO.7: 6 residues within 4Å: Chain B: H.40, G.41, Q.42, K.49, V.50, V.51 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.40, B:G.41 EDO.8: 6 residues within 4Å: Chain A: M.84, R.85, S.88 Chain B: G.56, E.57, V.58 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.88, B:V.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gopalan, A. et al., Structural and biophysical characterization of Rv3716c, a hypothetical protein from Mycobacterium tuberculosis. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-05-16

Peptides

Nucleoid-associated protein Rv3716c: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nucleoid-associated protein Rv3716c