SMTL ID : 5ys3.1

1.8 angstrom crystal structure of Succinate-Acetate Permease from Citrobacter koseri

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-hexamer

Ligands

36 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: L.24, N.28, L.103, L.138 Ligand excluded by PLIP ACT.2: 9 residues within 4Å: Chain A: F.17, T.21, L.24, N.25, F.75, W.76, L.131, L.134, F.135 Ligand excluded by PLIP ACT.3: 8 residues within 4Å: Chain A: G.13, L.14, F.17, Q.50, F.69, Y.72, F.128 Ligands: ACT.4 Ligand excluded by PLIP ACT.4: 6 residues within 4Å: Chain A: F.64, G.65, F.69, L.124, F.128 Ligands: ACT.3 Ligand excluded by PLIP ACT.5: 2 residues within 4Å: Chain A: F.52 Chain B: L.55 Ligand excluded by PLIP ACT.6: 3 residues within 4Å: Chain A: K.5, L.6, K.60 Ligand excluded by PLIP ACT.13: 5 residues within 4Å: Chain B: L.24, N.28, L.103, L.138, N.142 Ligand excluded by PLIP ACT.14: 9 residues within 4Å: Chain B: F.17, T.21, L.24, N.25, F.75, W.76, L.131, L.134, F.135 Ligand excluded by PLIP ACT.15: 6 residues within 4Å: Chain B: G.13, L.14, F.17, Q.50, F.69, Y.72 Ligand excluded by PLIP ACT.16: 6 residues within 4Å: Chain B: F.64, G.65, A.68, F.69, L.124, F.128 Ligand excluded by PLIP ACT.17: 3 residues within 4Å: Chain B: L.55, K.59 Ligands: ACT.31 Ligand excluded by PLIP ACT.18: 6 residues within 4Å: Chain B: Q.176 Chain C: N.62, F.64, G.116, A.120, L.124 Ligand excluded by PLIP ACT.27: 4 residues within 4Å: Chain C: L.24, N.28, L.79, L.138 Ligand excluded by PLIP ACT.28: 9 residues within 4Å: Chain C: F.17, T.21, L.24, N.25, F.75, W.76, L.131, L.134, F.135 Ligand excluded by PLIP ACT.29: 7 residues within 4Å: Chain C: G.13, L.14, F.17, Q.50, F.69, Y.72, V.127 Ligand excluded by PLIP ACT.30: 6 residues within 4Å: Chain C: F.64, G.65, A.68, F.69, L.124, F.128 Ligand excluded by PLIP ACT.31: 4 residues within 4Å: Chain C: L.55, Y.58, K.59 Ligands: ACT.17 Ligand excluded by PLIP ACT.32: 3 residues within 4Å: Chain C: I.48 Chain D: I.51, L.77 Ligand excluded by PLIP ACT.36: 4 residues within 4Å: Chain D: L.24, N.28, L.103, L.138 Ligand excluded by PLIP ACT.37: 9 residues within 4Å: Chain D: F.17, T.21, L.24, N.25, F.75, W.76, L.131, L.134, F.135 Ligand excluded by PLIP ACT.38: 8 residues within 4Å: Chain D: G.13, L.14, F.17, Q.50, F.69, Y.72, F.128 Ligands: ACT.39 Ligand excluded by PLIP ACT.39: 6 residues within 4Å: Chain D: F.64, G.65, F.69, L.124, F.128 Ligands: ACT.38 Ligand excluded by PLIP ACT.40: 2 residues within 4Å: Chain D: F.52 Chain E: L.55 Ligand excluded by PLIP ACT.41: 3 residues within 4Å: Chain D: K.5, L.6, K.60 Ligand excluded by PLIP ACT.48: 5 residues within 4Å: Chain E: L.24, N.28, L.103, L.138, N.142 Ligand excluded by PLIP ACT.49: 9 residues within 4Å: Chain E: F.17, T.21, L.24, N.25, F.75, W.76, L.131, L.134, F.135 Ligand excluded by PLIP ACT.50: 6 residues within 4Å: Chain E: G.13, L.14, F.17, Q.50, F.69, Y.72 Ligand excluded by PLIP ACT.51: 6 residues within 4Å: Chain E: F.64, G.65, A.68, F.69, L.124, F.128 Ligand excluded by PLIP ACT.52: 3 residues within 4Å: Chain E: L.55, K.59 Ligands: ACT.66 Ligand excluded by PLIP ACT.53: 6 residues within 4Å: Chain E: Q.176 Chain F: N.62, F.64, G.116, A.120, L.124 Ligand excluded by PLIP ACT.62: 4 residues within 4Å: Chain F: L.24, N.28, L.79, L.138 Ligand excluded by PLIP ACT.63: 9 residues within 4Å: Chain F: F.17, T.21, L.24, N.25, F.75, W.76, L.131, L.134, F.135 Ligand excluded by PLIP ACT.64: 7 residues within 4Å: Chain F: G.13, L.14, F.17, Q.50, F.69, Y.72, V.127 Ligand excluded by PLIP ACT.65: 6 residues within 4Å: Chain F: F.64, G.65, A.68, F.69, L.124, F.128 Ligand excluded by PLIP ACT.66: 4 residues within 4Å: Chain F: L.55, Y.58, K.59 Ligands: ACT.52 Ligand excluded by PLIP ACT.67: 3 residues within 4Å: Chain A: I.51, L.77 Chain F: I.48 Ligand excluded by PLIP

20 x PLM: PALMITIC ACID(Non-covalent)(Non-functional Binders)

PLM.7: 6 residues within 4Å: Chain A: A.123, S.163, Y.166, P.183, G.185 Ligands: PLM.10 Ligand excluded by PLIP PLM.8: 4 residues within 4Å: Chain A: K.87 Chain B: G.89, T.91, E.92 Ligand excluded by PLIP PLM.9: 3 residues within 4Å: Chain A: I.22, A.162 Chain B: L.105 Ligand excluded by PLIP PLM.10: 2 residues within 4Å: Chain A: Y.166 Ligands: PLM.7 Ligand excluded by PLIP PLM.19: 1 residues within 4Å: Ligands: 78M.26 Ligand excluded by PLIP PLM.20: 3 residues within 4Å: Chain B: A.162, I.165 Chain C: L.105 Ligand excluded by PLIP PLM.21: 5 residues within 4Å: Chain B: G.104, G.107, V.108, T.132, A.136 Ligand excluded by PLIP PLM.22: 3 residues within 4Å: Chain B: N.146, V.149, V.152 Ligand excluded by PLIP PLM.33: 2 residues within 4Å: Chain C: I.181 Chain D: L.118 Ligand excluded by PLIP PLM.34: 8 residues within 4Å: Chain C: G.107, V.108, T.132, A.136, A.139, F.140, I.143, A.144 Ligand excluded by PLIP PLM.42: 6 residues within 4Å: Chain D: A.123, S.163, Y.166, P.183, G.185 Ligands: PLM.45 Ligand excluded by PLIP PLM.43: 4 residues within 4Å: Chain D: K.87 Chain E: G.89, T.91, E.92 Ligand excluded by PLIP PLM.44: 3 residues within 4Å: Chain D: I.22, A.162 Chain E: L.105 Ligand excluded by PLIP PLM.45: 2 residues within 4Å: Chain D: Y.166 Ligands: PLM.42 Ligand excluded by PLIP PLM.54: 1 residues within 4Å: Ligands: 78M.61 Ligand excluded by PLIP PLM.55: 3 residues within 4Å: Chain E: A.162, I.165 Chain F: L.105 Ligand excluded by PLIP PLM.56: 5 residues within 4Å: Chain E: G.104, G.107, V.108, T.132, A.136 Ligand excluded by PLIP PLM.57: 3 residues within 4Å: Chain E: N.146, V.149, V.152 Ligand excluded by PLIP PLM.68: 2 residues within 4Å: Chain A: L.118 Chain F: I.181 Ligand excluded by PLIP PLM.69: 8 residues within 4Å: Chain F: G.107, V.108, T.132, A.136, A.139, F.140, I.143, A.144 Ligand excluded by PLIP

14 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78M.11: 6 residues within 4Å: Chain A: G.104, G.107, V.108, A.136, F.140, I.143 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.140 Hydrogen bonds: A:G.107 78M.12: 7 residues within 4Å: Chain A: A.81, M.85, M.88, L.90 Chain F: I.43, F.44, M.88 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.90 78M.23: 8 residues within 4Å: Chain B: I.43, F.44 Chain C: I.43, A.81, M.85, M.88, L.90 Ligands: 78M.24 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.43 78M.24: 6 residues within 4Å: Chain A: I.43 Chain B: I.43, A.81, M.85, M.88 Ligands: 78M.23 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.43, B:A.81 78M.25: 7 residues within 4Å: Chain B: A.123, A.162, S.163, Y.166, P.183, I.184, G.185 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.162, B:Y.166 78M.26: 6 residues within 4Å: Chain A: L.173, F.177, I.181 Chain B: F.112, F.115 Ligands: PLM.19 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.112, B:F.112, B:F.112, B:F.115 78M.35: 6 residues within 4Å: Chain C: I.22, L.158, V.159, A.162, S.163, Y.166 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.22, C:A.162 78M.46: 6 residues within 4Å: Chain D: G.104, G.107, V.108, A.136, F.140, I.143 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.140 Hydrogen bonds: D:G.107 78M.47: 7 residues within 4Å: Chain C: I.43, F.44, M.88 Chain D: A.81, M.85, M.88, L.90 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:L.90 78M.58: 8 residues within 4Å: Chain E: I.43, F.44 Chain F: I.43, A.81, M.85, M.88, L.90 Ligands: 78M.59 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:I.43 78M.59: 6 residues within 4Å: Chain D: I.43 Chain E: I.43, A.81, M.85, M.88 Ligands: 78M.58 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:I.43, E:A.81 78M.60: 7 residues within 4Å: Chain E: A.123, A.162, S.163, Y.166, P.183, I.184, G.185 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:A.162, E:Y.166 78M.61: 6 residues within 4Å: Chain D: L.173, F.177, I.181 Chain E: F.112, F.115 Ligands: PLM.54 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.112, E:F.112, E:F.112, E:F.115 78M.70: 6 residues within 4Å: Chain F: I.22, L.158, V.159, A.162, S.163, Y.166 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:I.22, F:A.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, B. et al., Succinate-acetate permease from Citrobacter koseri is an anion channel that unidirectionally translocates acetate. Cell Res. (2018)

Release Date

2018-04-25

Peptides

Succinate-Acetate Permease: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Succinate-Acetate Permease

Related Entries With Identical Sequence