SMTL ID : 5ysb.2 (1 other biounit)

Crystal structure of beta-1,2-glucooligosaccharide binding protein in ligand-free form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

9 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.393 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.393 ZN.2: 1 residues within 4Å: Chain A: E.363 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.363 ZN.3: 1 residues within 4Å: Chain A: D.218 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.218, A:D.218 ZN.4: 1 residues within 4Å: Chain A: S.23 No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain A: K.249, D.256 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.256 ZN.6: 1 residues within 4Å: Chain A: D.371 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.371, A:D.371 ZN.7: 1 residues within 4Å: Chain A: E.271 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.271 ZN.8: 2 residues within 4Å: Chain A: N.246, D.250 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.250 ZN.9: 2 residues within 4Å: Chain A: E.78, H.394 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.78, A:E.78, A:H.394

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 4 residues within 4Å: Chain A: G.137, Y.138, E.147, D.150 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abe, K. et al., Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua. J. Biol. Chem. (2018)

Release Date

2018-05-02

Peptides

Lin1841 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lin1841 protein

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