SMTL ID : 5yss.1

Crystal structure of aminocaproic acid cyclase in complex with NAD (+)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-tetramer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain B: G.12, S.13, T.14, S.15, G.16, I.17, N.35, G.36, F.37, A.59, D.60, L.61, N.87, A.88, G.89, I.90, I.110, I.137, A.138, S.139, Y.152, K.156, P.182, G.183, W.184, V.185, T.187, L.189 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.17, B:P.182 Hydrogen bonds: B:G.12, B:T.14, B:S.15, B:S.15, B:I.17, B:F.37, B:F.37, B:D.60, B:L.61, B:N.87, B:G.89, B:K.156, B:V.185, B:T.187, B:T.187 NAD.2: 29 residues within 4Å: Chain D: G.12, S.13, T.14, S.15, G.16, I.17, N.35, G.36, F.37, A.59, D.60, L.61, N.87, A.88, G.89, I.90, I.110, I.137, A.138, S.139, Y.152, K.156, P.182, G.183, W.184, V.185, T.187, P.188, L.189 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:P.182 Hydrogen bonds: D:G.12, D:T.14, D:S.15, D:S.15, D:I.17, D:F.37, D:F.37, D:D.60, D:D.60, D:L.61, D:S.62, D:A.88, D:G.89, D:Y.152, D:K.156, D:V.185, D:T.187, D:T.187 Water bridges: D:G.18, D:N.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeom, S.J. et al., A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts. Nat Commun (2018)

Release Date

2018-10-31

Peptides

3-hydroxybutyrate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-hydroxybutyrate dehydrogenase