SMTL ID : 5ysw.1

Crystal Structure Analysis of Rif16 in complex with R-L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: F.127, I.128, H.135, R.139, L.274, A.277, G.278, T.281, T.282, M.285, L.318, V.324, I.328, R.330, A.379, F.380, G.381, H.385, C.387, L.388, G.389, A.393, M.397 Ligands: 9LF.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:I.128, A:L.274, A:L.318, A:F.380, A:F.380, A:L.388 Hydrogen bonds: A:H.385 Water bridges: A:R.330 Salt bridges: A:H.135, A:R.139, A:R.330, A:H.385, A:H.385 pi-Stacking: A:F.380 Metal complexes: A:C.387

1 x 9LF: (2S,12E,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-21-(acetyloxy)-5,6,17,19-tetrahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-9-yl hydroxyacetate(Non-covalent)

9LF.2: 11 residues within 4Å: Chain A: S.97, I.128, N.129, N.216, A.217, V.324, F.329, R.330, F.331, L.427 Ligands: HEM.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.128, A:N.129, A:N.216, A:F.329, A:F.329, A:F.329, A:F.331, A:L.427 Hydrogen bonds: A:N.129, A:F.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, F. et al., Deciphering the late steps of rifamycin biosynthesis. Nat Commun (2018)

Release Date

2018-07-04

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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