SMTL ID : 5yt0.1

Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal translation initiation factor aIF5B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: H.24, V.25, D.26, H.27, G.28, K.29, T.30, T.31, N.141, K.142, D.144, R.145, S.209, A.210, R.211 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.26, A:H.27, A:G.28, A:K.29, A:T.30, A:T.31, A:T.31, A:N.141, A:K.142, A:K.142, A:S.209, A:A.210, A:R.211, A:R.211 Water bridges: A:D.26, A:K.29, A:K.29 Salt bridges: A:K.29, A:D.144 pi-Cation interactions: A:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murakami, R. et al., The Interaction between the Ribosomal Stalk Proteins and Translation Initiation Factor 5B Promotes Translation Initiation. Mol. Cell. Biol. (2018)

Release Date

2018-06-27

Peptides

Probable translation initiation factor IF-2: A
Archaeal ribosomal stalk protein aP1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable translation initiation factor IF-2

Archaeal ribosomal stalk protein aP1