SMTL ID : 5yts.1

Crystal structure of YB1 cold-shock domain in complex with UCUUCU

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x C- U- U- C: RNA (5'-R(P*CP*UP*UP*C)-3')(Non-covalent)

C-U-U-C.1: 12 residues within 4Å: Chain A: K.17, W.18, N.20, N.23, Y.25, F.27, D.36, F.38, H.40, K.71, A.73, E.74 Protein-ligand interaction information (PLIP) not available

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.45, R.54 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.46, A:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X.J. et al., Crystal structure of a Y-box binding protein 1 (YB-1)-RNA complex reveals key features and residues interacting with RNA. J.Biol.Chem. (2019)

Release Date

2018-12-05

Peptides

Nuclease-sensitive element-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclease-sensitive element-binding protein 1

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