SMTL ID : 5yv8.1

Structure of CaMKK2 in complex with CKI-002

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x 91L: 1-amino-4-hydroxy-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid(Non-covalent)

91L.1: 15 residues within 4Å: Chain A: I.21, G.22, Y.26, V.29, A.42, K.44, V.99, F.117, E.118, L.119, V.120, L.169, A.179, D.180 Ligands: GOL.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.21, A:I.21, A:I.21, A:V.99, A:F.117, A:L.119, A:L.169, A:L.169, A:A.179 Hydrogen bonds: A:Y.26, A:E.118, A:V.120, A:D.180 Water bridges: A:F.181 Salt bridges: A:K.44

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.22, K.23, Y.26, P.124, S.166, N.167, L.169 Ligands: 91L.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.23, A:K.23 GOL.3: 3 residues within 4Å: Chain A: Q.138, F.141, Y.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.142 GOL.4: 5 residues within 4Å: Chain A: F.187, K.188, D.191, A.192, L.193 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.188, A:L.193 Water bridges: A:D.191, A:D.191, A:L.193 GOL.5: 6 residues within 4Å: Chain A: E.282, S.283, R.284, I.285, V.286, E.289 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.282 Water bridges: A:S.283, A:S.283

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: K.164, P.165, S.166 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takaya, D. et al., Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. (2020)

Release Date

2018-12-05

Peptides

Calcium/calmodulin-dependent protein kinase kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin-dependent protein kinase kinase 2

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