SMTL ID : 5yv9.1

Structure of CaMKK2 in complex with CKI-009

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x 91O: 5-chloro-2-methoxy-4[(1Z)-3-(4-methoxyphenyl)-3-oxoprop-1-en-1-yl]aminobenzoic acid(Non-covalent)

91O.1: 17 residues within 4Å: Chain A: I.21, Y.26, V.29, A.42, K.44, E.86, L.90, V.99, F.117, V.120, N.121, Q.122, G.123, P.124, L.169, D.180, F.181 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.21, A:I.21, A:V.29, A:F.117 Hydrogen bonds: A:D.180, A:F.181 Water bridges: A:G.182 Salt bridges: A:K.44

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: Q.138, Y.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.138 GOL.3: 5 residues within 4Å: Chain A: E.282, S.283, R.284, I.285, E.289 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.282 Water bridges: A:S.283

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: V.128, K.164, P.165, S.166 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takaya, D. et al., Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. (2020)

Release Date

2018-12-05

Peptides

Calcium/calmodulin-dependent protein kinase kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin-dependent protein kinase kinase 2

Related Entries With Identical Sequence