SMTL ID : 5yva.1

Structure of CaMKK2 in complex with CKI-010

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x 91X: 3-(1H-tetrazol-5-yl)-10lambda~6~-thioxanthene-9,10,10-trione(Non-covalent)

91X.1: 13 residues within 4Å: Chain A: I.21, G.22, V.29, A.42, K.44, V.99, F.117, L.119, V.120, G.123, L.169, A.179, D.180 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.21, A:V.29, A:A.42, A:F.117, A:L.119, A:L.169 Hydrogen bonds: A:V.120, A:D.180, A:D.180 Water bridges: A:F.181 pi-Stacking: A:F.117

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: Q.138, Y.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.142 GOL.3: 5 residues within 4Å: Chain A: F.187, K.188, D.191, A.192, L.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.188, A:L.193, A:L.193 GOL.4: 6 residues within 4Å: Chain A: E.282, S.283, R.284, I.285, V.286, E.289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.282

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: K.164, P.165, S.166 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takaya, D. et al., Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. (2020)

Release Date

2018-12-05

Peptides

Calcium/calmodulin-dependent protein kinase kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin-dependent protein kinase kinase 2

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