SMTL ID : 5yvb.1

Structure of CaMKK2 in complex with CKI-011

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x 92C: (3Z)-5-chloro-3-[(1-methyl-1H-pyrazol-4-yl)methylidene]-1,3-dihydro-2H-indol-2-one(Non-covalent)

92C.1: 11 residues within 4Å: Chain A: I.21, A.42, F.117, E.118, L.119, V.120, N.121, G.123, L.169, A.179, D.180 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.21, A:F.117, A:L.169, A:A.179 Hydrogen bonds: A:E.118, A:V.120

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.187, K.188, D.191, A.192, L.193 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.188, A:L.193, A:L.193 Water bridges: A:D.191, A:D.191 GOL.3: 6 residues within 4Å: Chain A: E.282, S.283, R.284, I.285, V.286, E.289 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.282 Water bridges: A:S.283, A:S.283 GOL.4: 2 residues within 4Å: Chain A: F.141, Y.142 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.142 Water bridges: A:Y.142 GOL.5: 5 residues within 4Å: Chain A: V.125, K.132, P.133, L.134, Q.138 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 1 residues within 4Å: Chain A: R.244 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.244, A:R.244

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: K.164, P.165, S.166 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takaya, D. et al., Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. J.Mol.Graph.Model. (2020)

Release Date

2018-12-05

Peptides

Calcium/calmodulin-dependent protein kinase kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin-dependent protein kinase kinase 2

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