SMTL ID : 5yvo.1

Human Glutathione Transferase Omega1 covalently bound to ML175 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: E.21, G.22, S.78, Q.79 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.22, A:S.78, A:S.78, A:Q.79, A:Y.97 Water bridges: A:E.21, A:E.21, A:E.21, A:S.78 SO4.2: 4 residues within 4Å: Chain A: R.39, H.49, V.51, L.215 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.39, A:R.39 Salt bridges: A:R.39, A:H.49 SO4.3: 1 residues within 4Å: Chain A: R.30 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.30 Water bridges: A:R.39, A:R.39, A:R.39 SO4.7: 4 residues within 4Å: Chain B: E.21, G.22, S.78, Q.79 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.22, B:S.78, B:S.78, B:Q.79 Water bridges: B:E.21, B:E.21, B:S.78 SO4.8: 4 residues within 4Å: Chain B: R.39, H.49, V.51, L.215 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.39, B:R.39 Salt bridges: B:R.39, B:H.49 SO4.9: 1 residues within 4Å: Chain B: R.30 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.30 Water bridges: B:R.39, B:R.39, B:R.39

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: E.91, L.103, Q.113, K.114, L.117, M.172, L.176 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.113, A:L.176 Hydrogen bonds: A:E.91 ACT.10: 7 residues within 4Å: Chain B: E.91, L.103, Q.113, K.114, L.117, M.172, L.176 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.113, B:L.176

4 x MLX: N-{3-[(2-chloro-acetyl)-(4-nitro-phenyl)-amino]-propyl}-2,2,2-trifluoro-acetamide(Covalent)

MLX.5: 14 residues within 4Å: Chain A: M.29, C.32, P.33, F.34, L.56, K.57, V.127, G.128, I.131, W.180, R.183, W.222, Y.229, C.237 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.229 Hydrogen bonds: A:F.34 Water bridges: A:Y.229 MLX.6: 11 residues within 4Å: Chain A: Y.108, C.112, M.115, E.155, V.156, N.159, K.160 Chain B: K.65, K.66, L.82, Y.84 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.84 Halogen bonds: B:K.66 Hydrophobic interactions: A:V.156 MLX.11: 14 residues within 4Å: Chain B: M.29, C.32, P.33, F.34, L.56, K.57, V.127, G.128, I.131, W.180, R.183, W.222, Y.229, C.237 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.229 Hydrogen bonds: B:F.34 Water bridges: B:Y.229 MLX.12: 11 residues within 4Å: Chain A: K.65, K.66, L.82, Y.84 Chain B: Y.108, C.112, M.115, E.155, V.156, N.159, K.160 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.156 Hydrogen bonds: A:Y.84, A:Y.84 Halogen bonds: A:K.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saisawang, C. et al., Glutathione transferase Omega 1-1 (GSTO1-1) modulates Akt and MEK1/2 signaling in human neuroblastoma cell SH-SY5Y. Proteins (2019)

Release Date

2018-11-28

Peptides

Glutathione S-transferase omega-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutathione S-transferase omega-1

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