SMTL ID : 5yvr.1

Crystal Structure of the H277A mutant of ADH/D1, an archaeal halo-thermophilic Red Sea brine pool alcohol dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.213, H.217, H.282, H.297, L.301 Ligands: NDP.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.213, A:H.217, A:H.282, A:H.297 MN.3: 6 residues within 4Å: Chain B: D.213, H.217, H.282, H.297, L.301 Ligands: NDP.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.213, B:H.217, B:H.282, B:H.297

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 32 residues within 4Å: Chain A: G.47, K.48, S.49, N.50, M.51, L.54, P.79, N.80, P.81, G.106, G.107, S.108, D.111, S.157, T.158, T.161, S.163, T.166, Y.168, V.170, K.179, I.198, E.201, M.202, P.203, L.206, T.210, D.213, H.217, N.273, H.297 Ligands: MN.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:K.48, A:S.49, A:N.50, A:N.50, A:N.80, A:N.80, A:G.106, A:G.107, A:S.108, A:S.108, A:T.166, A:K.179, A:I.198, A:H.297 Water bridges: A:G.47, A:M.51, A:I.77, A:N.80, A:S.109, A:S.109, A:S.109, A:S.157, A:T.161, A:V.170, A:V.170, A:N.273 NDP.4: 32 residues within 4Å: Chain B: G.47, K.48, S.49, N.50, M.51, L.54, P.79, N.80, P.81, G.106, G.107, S.108, D.111, S.157, T.158, T.161, S.163, T.166, Y.168, V.170, K.179, I.198, E.201, M.202, P.203, L.206, T.210, D.213, H.217, N.273, H.297 Ligands: MN.3 28 PLIP interactions: 28 interactions with chain B Hydrogen bonds: B:K.48, B:S.49, B:N.50, B:N.50, B:N.80, B:N.80, B:G.106, B:G.107, B:S.108, B:S.108, B:T.158, B:T.166, B:T.166, B:K.179, B:I.198, B:H.297 Water bridges: B:G.47, B:M.51, B:I.77, B:N.80, B:S.109, B:S.109, B:S.109, B:T.156, B:S.157, B:V.170, B:V.170, B:N.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Groetzinger, S.W. et al., Identification and Experimental Characterization of an Extremophilic Brine Pool Alcohol Dehydrogenase from Single Amplified Genomes. ACS Chem. Biol. (2018)

Release Date

2017-12-27

Peptides

alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

alcohol dehydrogenase