SMTL ID : 5yvx.1

Crystal structure of SDG8 CW domain in complex with H3K4me1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- MLZ- GLN- THR- ALA: H3K4me1(Non-covalent)

ALA-ARG-THR-MLZ-GLN-THR-ALA.1: 17 residues within 4Å: Chain A: A.3, W.4, V.5, R.6, D.8, W.13, V.21, I.24, D.25, E.26, S.28, W.30, N.51, I.54, N.55, L.58, I.60 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.13, A:V.21, A:I.24, A:W.30, A:L.58 Hydrogen bonds: A:W.4, A:W.4, A:R.6, A:S.28, A:N.55 Water bridges: A:S.2, A:R.6, A:R.6, A:R.6, A:R.6, A:D.8, A:I.24, A:E.26 Salt bridges: A:E.26

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.7, C.10, C.32, C.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:C.32, A:C.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Uncovering the mechanistic basis for specific recognition of monomethylated H3K4 by the CW domain ofArabidopsishistone methyltransferase SDG8. J. Biol. Chem. (2018)

Release Date

2018-03-14

Peptides

Histone-lysine N-methyltransferase ASHH2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase ASHH2