SMTL ID : 5ywr.1

Crystal Structure of RING E3 ligase ZNRF1 in complex with Ube2N (Ubc13)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 5 residues within 4Å: Chain A: G.22, I.23, K.24, V.38, T.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.22 Water bridges: A:I.23

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: R.85, I.86, C.87, K.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.86, A:K.92

3 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: C.46, C.49, H.69, C.72 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.46, B:C.49, B:H.69, B:C.72 ZN.4: 4 residues within 4Å: Chain B: C.7, C.10, H.22, C.26 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.7, B:C.10, B:H.22, B:C.26 ZN.5: 4 residues within 4Å: Chain B: C.64, C.66, C.83, H.86 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.64, B:C.66, B:C.83, B:H.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Behera, A.P. et al., Structural insights into the nanomolar affinity of RING E3 ligase ZNRF1 for Ube2N and its functional implications. Biochem. J. (2018)

Release Date

2018-06-06

Peptides

Ubiquitin-conjugating enzyme E2 N: A
E3 ubiquitin-protein ligase ZNRF1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 N

E3 ubiquitin-protein ligase ZNRF1

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