SMTL ID : 5yx6.1 (1 other biounit)

Crystal structure of Rv3272 from M. tuberculosis orthorhombic form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

5 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 4 residues within 4Å: Chain A: N.124, R.193, E.194, G.197 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.193 Hydrogen bonds: A:E.194 BEN.2: 1 residues within 4Å: Chain A: K.273 No protein-ligand interaction detected (PLIP) BEN.3: 2 residues within 4Å: Chain A: R.280, D.282 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.282 BEN.5: 3 residues within 4Å: Chain B: K.273, Y.276, N.325 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.273, B:Y.276 Hydrogen bonds: B:K.273 BEN.6: 5 residues within 4Å: Chain B: D.94, R.121, N.122, P.123, N.124 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.123 Hydrogen bonds: B:D.94, B:N.124 Water bridges: B:N.122, B:N.122

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: A.102, F.103, R.104, P.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.102, A:R.104, A:R.104 GOL.7: 2 residues within 4Å: Chain A: R.104 Chain B: H.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.104 GOL.8: 3 residues within 4Å: Chain A: H.270, K.273 Chain B: R.104 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.273, B:R.104, B:R.104 Water bridges: A:K.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karade, S.S. et al., Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress. Biochim Biophys Acta Proteins Proteom (2019)

Release Date

2018-11-07

Peptides

Uncharacterized protein Rv3272: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein Rv3272

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