SMTL ID : 5yy6.1

Crystal structure of Arabidopsis thaliana HPPD truncated mutant complexed with Benquitrione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.196, H.278, E.364 Ligands: 94L.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.196, A:H.278, A:E.364, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.196, H.278, E.364 Ligands: 94L.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.196, B:H.278, B:E.364, H2O.2

2 x 94L: 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione(Non-covalent)

94L.2: 16 residues within 4Å: Chain A: H.196, V.198, S.237, P.250, N.252, Q.263, H.278, M.305, F.351, F.362, E.364, F.389, G.390, K.391, F.394 Ligands: CO.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.250, A:Q.263, A:F.351, A:F.351, A:F.389, A:F.394, A:F.394 Water bridges: A:Q.349 94L.4: 16 residues within 4Å: Chain B: H.196, V.198, S.237, P.250, N.252, Q.263, H.278, M.305, F.351, F.362, E.364, F.389, G.390, K.391, F.394 Ligands: CO.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.250, B:Q.263, B:F.351, B:F.351, B:F.389, B:F.394, B:F.394 Water bridges: B:Q.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, H.Y. et al., Crystal Structure of 4-Hydroxyphenylpyruvate Dioxygenase in Complex with Substrate Reveals a New Starting Point for Herbicide Discovery. Research (Wash D C) (2019)

Release Date

2019-01-16

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase