SMTL ID : 5yyc.1

Crystal structure of alanine racemase from Bacillus pseudofirmus (OF4)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 11 residues within 4Å: Chain A: K.41, Y.45, L.87, R.139, H.169, N.209, S.210, R.225, G.227, I.228, Y.352 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:K.41 Hydrogen bonds: A:R.139, A:R.139, A:H.169, A:S.210, A:R.225, A:R.225, A:G.227, A:I.228, A:Y.352 Water bridges: A:N.209, A:N.209, A:A.211 Salt bridges: A:K.41 pi-Cation interactions: A:H.169 PLP.2: 11 residues within 4Å: Chain B: K.41, Y.45, L.87, R.139, H.169, N.209, S.210, R.225, G.227, I.228, Y.352 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.41 Hydrogen bonds: B:K.41, B:Y.45, B:Y.45, B:R.139, B:R.139, B:S.210, B:R.225, B:G.227, B:I.228 Water bridges: B:N.209, B:N.209, B:A.211, A:Y.269 pi-Cation interactions: B:H.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, H. et al., Structural features and kinetic characterization of alanine racemase from Bacillus pseudofirmus OF4. Biochem. Biophys. Res. Commun. (2018)

Release Date

2019-01-02

Peptides

Alanine racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Alanine racemase