SMTL ID : 5yz2.1

the cystathionine-beta-synthase (CBS) domain of magnesium and cobalt efflux protein CorC in complex with both C2'- and C3'-endo AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: I.13, Q.17, M.18, I.19, A.38, H.39, S.40, R.41, F.42, P.43, M.104, L.117, T.119, D.122 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:I.19, A:I.19, A:S.40, A:T.119, A:T.119, A:D.122 Water bridges: A:H.39, A:S.40, A:S.40, A:S.40, A:S.40, A:R.41, A:R.41 Salt bridges: A:H.39 pi-Stacking: A:H.39, A:H.39 AMP.2: 15 residues within 4Å: Chain B: I.13, Q.17, M.18, I.19, A.38, H.39, S.40, R.41, F.42, P.43, M.104, L.117, T.119, E.121, D.122 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:I.19, B:I.19, B:A.38, B:S.40, B:S.40, B:T.119, B:T.119, B:D.122 Water bridges: B:E.121 Salt bridges: B:H.39 pi-Stacking: B:H.39, B:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, N. et al., The C2'- and C3'-endo equilibrium for AMP molecules bound in the cystathionine-beta-synthase domain. Biochem. Biophys. Res. Commun. (2018)

Release Date

2018-05-30

Peptides

Magnesium and cobalt efflux protein CorC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Magnesium and cobalt efflux protein CorC