SMTL ID : 5yzm.1

Crystal structure of S9 peptidase (inactive form) from Deinococcus radiodurans R1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: G.435, G.436, S.515, Y.516, F.556, R.600 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.556 Hydrogen bonds: A:G.436, A:Y.516 Water bridges: A:R.600 Salt bridges: A:R.600 ACT.2: 6 residues within 4Å: Chain B: G.435, G.436, S.515, Y.516, F.556, R.600 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.556 Hydrogen bonds: B:G.436, B:Y.516 Water bridges: B:R.600 Salt bridges: B:R.600 ACT.3: 5 residues within 4Å: Chain C: G.435, G.436, S.515, Y.516, R.600 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.436, C:Y.516 Water bridges: C:R.600 Salt bridges: C:R.600 ACT.4: 6 residues within 4Å: Chain D: G.435, G.436, S.515, Y.516, F.556, R.600 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.556 Hydrogen bonds: D:G.436, D:Y.516 Water bridges: D:G.436, D:R.600 Salt bridges: D:R.600

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, P. et al., Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms. J.Biol.Chem. (2019)

Release Date

2018-11-14

Peptides

Acyl-peptide hydrolase, putative: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acyl-peptide hydrolase, putative

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