SMTL ID : 5z05.1

Crystal structure of signalling protein from buffalo (SPB-40) with an acetone induced conformation of Trp78 at 1.49 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.39, I.40, S.41, W.48, R.84 No protein-ligand interaction detected (PLIP)

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 8 residues within 4Å: Chain A: W.10, R.14, W.78, T.266, E.268, I.271, W.330, L.334 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.78, A:E.268, A:I.271, A:I.271 Hydrogen bonds: A:R.14 Water bridges: A:W.10, A:W.10, A:R.14, A:T.266

1 x ACN: ACETONE(Non-covalent)

ACN.3: 4 residues within 4Å: Chain A: W.78, L.119, Y.185, W.330 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.78, A:L.119, A:W.330 Hydrogen bonds: A:Y.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaudhary, A. et al., A glycoprotein from mammary gland secreted during involution promotes apoptosis: Structural and biological studies. Arch. Biochem. Biophys. (2018)

Release Date

2018-01-31

Peptides

Chitinase-3-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase-3-like protein 1

Related Entries With Identical Sequence