SMTL ID : 5z0r.1

Structural insight into the Zika virus capsid encapsulating the viral genome

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156 GLC-GLC.2: 14 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, W.341 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.13, B:D.15, B:K.16, B:E.112 Water bridges: B:D.15, B:A.64, B:N.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Structural insight into the Zika virus capsid encapsulating the viral genome. Cell Res. (2018)

Release Date

2018-04-11

Peptides

Extracellular solute-binding protein family 1,viral genome protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Extracellular solute-binding protein family 1,viral genome protein

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