SMTL ID : 5z0t.2 (1 other biounit)

Thermoactinomyces vulgaris R-47 alpha-amylase I (TVA I) mutant A357V/Q359N/Y360E (AQY/VNE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: A.2, D.4, N.6, D.42, D.96 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.2, A:N.6, A:D.42, A:D.42, A:D.96 CA.2: 6 residues within 4Å: Chain A: N.145, D.147, N.150, D.151, G.187, D.189 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.147, A:D.151, A:G.187, A:D.189, H2O.2 CA.3: 5 residues within 4Å: Chain A: D.276, N.279, F.281, S.283, E.288 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.276, A:F.281, A:S.283, A:E.288, H2O.26

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: H.221, Y.223, F.310, F.313, L.316 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.223, A:F.310, A:F.313, A:L.316 Water bridges: A:R.520, A:R.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tonozuka, T. et al., Mutagenesis-induced conformational change in domain B of a pullulan-hydrolyzing alpha-amylase TVA I. Amylase (2018)

Release Date

2018-02-21

Peptides

Neopullulanase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neopullulanase 1

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