SMTL ID : 5z0u.1

Thermoactinomyces vulgaris R-47 alpha-amylase I (TVA I) 11 residues (from A363 to N373) deletion mutant (Del11)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: A.2, D.4, N.6, D.42, D.96 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.2, A:N.6, A:D.42, A:D.42, A:D.96 CA.2: 6 residues within 4Å: Chain A: N.145, D.147, N.150, D.151, G.187, D.189 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.147, A:D.151, A:G.187, A:D.189, H2O.4 CA.3: 5 residues within 4Å: Chain A: D.276, N.279, F.281, S.283, E.288 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.276, A:F.281, A:S.283, A:E.288, H2O.24

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 4 residues within 4Å: Chain A: H.221, F.313, S.315, L.316 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.313, A:L.316 Water bridges: A:S.182, A:S.182, A:S.315, A:D.505, A:D.505, A:D.505, A:D.505

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tonozuka, T. et al., Mutagenesis-induced conformational change in domain B of a pullulan-hydrolyzing alpha-amylase TVA I. Amylase (2018)

Release Date

2018-02-21

Peptides

Neopullulanase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neopullulanase 1