SMTL ID : 5z1w.1

Cryo-EM structure of polycystic kidney disease-like channel PKD2L1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.110, N.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.114 NAG.2: 2 residues within 4Å: Chain A: N.144, L.172 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain A: N.178 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: K.110, N.114 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.114 NAG.5: 2 residues within 4Å: Chain B: N.144, L.172 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain B: N.178 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain C: K.110, N.114 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.114 NAG.8: 2 residues within 4Å: Chain C: N.144, L.172 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain C: N.178 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain D: K.110, N.114 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.114 NAG.11: 2 residues within 4Å: Chain D: N.144, L.172 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain D: N.178 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, Q. et al., Cryo-EM structure of the polycystic kidney disease-like channel PKD2L1. Nat Commun (2018)

Release Date

2018-03-28

Peptides

Polycystic kidney disease 2-like 1 protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Polycystic kidney disease 2-like 1 protein