SMTL ID : 5z1z.1

The apo-structure of D-lactate dehydrogenase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-tetramer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: E.21 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.21, H2O.2, H2O.2, H2O.2

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: T.8, Q.10, K.13, F.29, D.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.10, A:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furukawa, N. et al., Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria. Biochemistry (2018)

Release Date

2018-09-19

Peptides

D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding